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W(8㿘'H'D@K"@ 㿠@-??@@㿠@-\??@@??ApC`Cp?񙙙@??Q?333333?333333Hsleep 1sleep 1@dhpxCH@H@HBCF?@Y?GC%s%s%s -- Version %s Converting from %s to %s file type Converting from multiple display to stack format TIME POINTS: %d NUM SLICES: %d CONVERT MDISPLAY: %s ROWS: %hd COLUMNS: %hd OUTPUT X SIZE: %hd OUTPUT Y SIZE: %hd SEPARATE TIME PTS: %s SEPARATE SLICES: %s THICKNESS USED: %0.4f MDISPLAY MODE: %s 1st Slice: %hd Last Slice: %hd output file type: %s output data type: %s Byte swapping: %s Output file is Little Endian and computer is Big Endian Output file is Big Endian and computer is Little Endian Byte swapping enabled USAGE: %s -i infile.ext1 -o outfile.ext2 [ M, T, A, #, t, s, m, O, X, Y, R, e, f, F, c, V] General purpose file format conversion. File types are interpreted from the names The first two arguments are required Don't be put off, ONLY the first two are required, the rest are special purpose options -M scalar intensity multiplier -T slice thickness (for Analyze output) -A Analyze 3D format. Follow by slice thickness -# number of slices in 'mdisplay' format for infile -t separate file for each time point -s separate file for each slice -N Normalize full range of input intensities to full range of output type -m F-L save output files in mdisplay format (multiple slices/image) F and L are the first and last slice for mdisplay The option '-m A' will use all slices -O output byte order. Enter -O L for pc/dec (little endian) or -O B for mac/Sun/SGI (big endian) -X field of view (mm) in X -Y field of view (mm) in Y - enter only if different from field of view in X! -R Auto window input intensities to full range of output type -e emulate epi2bshort (but without offset artifacts!) -f force output type to float for Analyze files -F flip image top and bottom -c suppress cropping off the edges of images -V verbose operation saves a processing file "outFile.%s.proc" Input files may be: .bfloat .bshort .buchar .img (Analyze) .img (APD) .MR (Signa Genesis) Output files may be: .bfloat .bshort .buchar .img (Analyze) Output byte order is the same as that of the computer on which %s is run EXAMPLES: Convert the file myIn.bshort to float > %s -i myIn.bshort -o myOut.bfloat ------------------ Convert the mdisplay file myIn.bfloat, containing fifteen 5 mm thick slices to Analyze 3D format. Multiply all values by 100. > %s -i myIn.bfloat -o myOut.img -A 5 -# 15 -M 100 Output files are named myOut.tXXX.img, where XXX is the time point ------------------ Emulate epi2bshort, converting APD files to all time points at each slice > %s -i myIn_0123_001_003.img -e Output files are named A1.sXX.bshort, where XX is the slice number ------------------ Convert a Signa genesis file to an Analyze file > %s -i E02334S5I11.MR -o Signa1.img ------------------ Rescale data for use with 8-bit display programs (e.g., Photoshop) > %s -i myIn.bfloat -o EightBit.buchar -R ------------------ Convert an input file into an mdisplay format using slices 3, 4, 5 and 6 > %s -i myIn_0123_001_003.img -o myMDisplay.bshort -m 3-6 ------------------ Convert an input file into an mdisplay format using ALL slices > %s -i myIn_0123_001_003.img -o myMDisplay.bshort -m A ------------------ More information can be found on the Brain Mapping lab HowTo pages o:i:M:T:A:#:m:O:X:Y:cRNetsfFSNVh?%hd-%hdA1.bshorto:i:M:T:A:#:m:O:X:Y:cRNetsfFSNVh?Sorry, the s and t (options) cannot be applied simultaneously! Sorry, the s (separate slices) and m (mdisplay) options cannot be applied simultaneously! Sorry, the input file has %hd slices, but you have asked for %hd. AutoRange: Data rescaled to fall between %0.2f and %0.2f AutoRange: non-noise pts: %ld AUTORANGE: Data rescaled to fall between %0.2f and %0.2f AUTORANGE: non-noise pts: %ld AutoRange: Data rescaled to fall between %0.2f and %0.2f AutoRange: non-noise pts: %ld AUTORANGE: Data rescaled to fall between %0.2f and %0.2f Multiplying signal intensities by: %f Something is wrong with the dimensions you entered! %d%% complete %s.t%0.3d %s: %s: time point: %d %s.t%0.3d Time point %d of %d %d%% complete A1.s%d%s.s%0.3d%s%s%s: Slice %d of %d %s: Slice %d of %d %s %d %d The input data was rescaled to maintain an adequate intensity resolution. The input data range was too narrow, and was rescaled accordingly. %s%s%s%s %s%s%s%s %s.%s.proc%s version ...... %s ImgLib version ....... %s %cExecuted on .......... %s Command line: %s %d Waiting for file %s for %d more seconds Timed out waiting for %s. %sWaiting for data from %s: %d more seconds %sTimed out reading from list %snum_slices %d images_per_slice %d NEX %d xsize %d ysize %d part_phase %d part_read %d oversample %d interleave %d read_fov %d phase_fov %d xextra %d xover %d magnitude_image %d I_image %d Q_image %d phase_image %d time_data %d rotation 0 reflection_x 1 reflection_y 0.hdr%d %d %d %hd.hdr.irp.bfloat.bshort.buchar.img.MRnonemm0%m/%d/%y%H:%M:%S%s.hdr%d %d %d %d%s.buchar%s.bshort%s.bfloatScSthdr.img.irp.IMG.IRPIMGFUCLA Brain Mappinganonymous%hd%hd%hd%hd%s%hd%s%hd%s%s%s%hd%s%hd%s%s%s%s%s%s%s%s%s%f%s%fUC Read Image %d,%d nonemm%-80.80sUCLA MRI0%m/%d/%Y%H:%M:%SmmE%0.3dS%0.2dI%0.2d%m/%d/%Y%H:%M:%S%sShow Header, ver 2.01 Dec 23, 1998. Name = %s hk.size_of_hdr: %d hk.data_type: "%-10s" hk.db_name: "%-8s" hk.extents: %d hk.session_error: %d hk.regular: '%c' hk.hkey_unused0: '%c' dime.dim: [%d] | %.4d | [hex] %04x | dime.vox_units: "%-4s" dime.cal_units: "%-8s" dime.flags: %04x dime.datatype: %d dime.bitpix: %d dime.dim_un0: %d dime.pixdim[%d]: %f dime.vox_offset: %f dime.funused1: %f dime.funused2: %f dime.funused3: %f dime.cal_max: %f dime.cal_min: %f dime.compressed: %ld dime.verified: %ld dime.glmax: %ld dime.glmin: %ld hist.descrip: "%-40.40s" "%-40.40s" hist.aux_file: "%-24s" hist.orient: "%c" hist.originator: "%-10s" hist.generated: "%-10s" hist.scannum: "%-10s" hist.patient_id: "%-10s" hist.exp_date: "%-10s" hist.exp_time: "%-10s" hist.hist_un0: "%-3s" hist.views: %ld hist.vols_added: %ld hist.start_field: %ld hist.field_skip: %ld hist.omax: %ld hist.omin: %ld hist.smax: %ld hist.smin: %ld ***** ImbLib Error handler ***** ===> unix error: %sAn ImgLib function received an unrecognized data type as an argument.Divide by zero error.A function returned an invalid memory address.Array range error.An ImgLib function received a pointer to NIL.The image pointer is NIL.There is not enough memory to complete this operation.Memory error - usually allocation.This function accepts only positive inputs.Attempted to reallocated already assigned pointer.The overlay routine failed.The mdisplay routine failed.Auto range does not function properly with negative input data.The threshold cannot be negative.A scale factor of zero was found.This volume display is not available.The data exceeds the valid range for this function.This functions halted while waiting for data.There was a problem during data type conversion.The input data contained a limited range of values: auto detection of intensity range may be poor.To preserve image quality, your data were rescaled; the resolution of the output type was less than that of the original data.An unrecognized display mode was selected.There was a problem opening an image headerThe header could not be openedThe file does not containa valid genesis (Signa) headerThe header is the wrong size.The header contains invalid data.The image file does not have a corresponding header.The header requests interpolation in both X and Y. It is probably corrupted.The Image could not be opened.There is a problem with the image file.Having trouble with that paradigm file Premature end of file.A required file could not be found.The log file could not be opened.This image file type is not recognized.A file could not be written successfully.A file could not be read successfully.A file could not be opened successfully.A file could not be closed successfully.There is a problem with the selected fileThe data values exceed the range for the selected data type.The file name is not valid.The file could not be opened for reading.The file could not be opened for writing.The file could not be opened for appending.An unknown error occured. An internal program error occured in an ImgLib routine. The reported error was: ===> %s The error message was: ===> %s Sometimes, you can find the source of the error by examining the processing files created by the program you are running (they typically end in .proc ) If you cannot resolve the problem, contact Mark Cohen (mscohen@ucla.edu) **** %hd: %s **** truefalseShowError: %s(%d) on %s! ERROR: The file '%s' rcould not be read. wcould not be written. rwcould not be opened for read/write. acould not be opened for appending. could not be used. errno reports: %s ck_fwrite: Memory location: %ld Requested size: %ld %sck_fread: Memory location: %ld Requested size: %ld ck_fclose: error on file close Error allocating memory for: %s! ck_malloc: Error allocating memory for: %s! cpy_alloc: %s = %s (%08x = %08x) Undefined type in vsmul Undefined type in vsmul Undefined type in vadd Undefined type in vsub Undefined type in vmul vdiv -- Undefined type Undefined type in vminmax Undefined type in vsq Undefined type in vsq Undefined type in vssq Undefined type in vsum Undefined type in vsub 00<0H0T0`0l0x00000000000000 0,080D0P0\0h0t0000000000000~0{0x(0u40r = G  Xo*oP f o+@*X :P$Revision: 1.30 $$Date: 2002/04/25 02:36:40 $?$Revision: 2.76 $$Date: 2002/04/26 03:32:37 $error in command lineFailed getting output name baseDetermining output file typeInput image headerData Range CheckrFunction: SavingByTimePointFunction: SaveBySliceinfileGetting number of rows and columnsALBStorage for input dataStorage for output dataStorage for output datawwImage flipout fileoutfileinDataoutDatamdispBuffStorage for input dataStorage for output datawRead ImageImage flipinDataoutDatawAnalyzeAPD2Signa GenesisMGH bfloatMGH bshortMGH bucharVarianunrecognized file typeyinterp: ftmpyinterp: ftmpyinterp: stmpyinterp: stmpyinterp: ustmpyinterp: ustmpyinterp: ctmpyinterp: ctmpyinterp: uctmpyinterp: uctmpyinterp: itmpyinterp: itmpyinterp: dtmpyinterp: dtmpxinterp: ftmpxinterp: ftmpxinterp: uctmpxinterp: uctmpxinterp: ctmpxinterp: ctmpxinterp: ustmpxinterp: ustmpxinterp: stmpxinterp: stmpxinterp: itmpxinterp: itmpxinterp: dtmpxinterp: dtmpinterp2D: uiptrinterp2D: uiptrinterp2D: ucptrinterp2D: ucptrinterp2D: fptrinterp2D: fptrScaleImageSize: interpBuffScaleImageSize: interpBuffImageFlipY: scratch spacegaussian kernelsmoothed vectorconvolution vectorkernelsmoothlocal_inhistogramSmooth histsmoothed histogramhistogramrget_para_file_sizerirpStringwCreating Analyze HeaderwwwwbBuffer for Signa HeaderReadheader - temp data storageUC_Readheader: headerDataRealLocalFile: headerDataReadheader: headerDataimageIdentOffsetHistOffsetSuiteOffsetExamOffsetSeriesOffsetImageOffsetUserDataOffsetUC_Readheader: Header DatarUCReadimage--data bufferRead image bufferrReadLocalFile contents.bshort.bfloat.buchar.img.img.mr.fnffloatshortunsigned shortcharunsigned charintdoublecomplexlongUnrecognized data typerwarwwrrNoYesP**+(+@-P  X Ũ Ű |0N Ũ )-P 3:HT`iwŨ   8 DxT 8= @ *-P 1XH :A<Vx c\h<